Coronavirus packaging signal
| Coronavirus packaging signal | |
|---|---|
 Predicted secondary structure and sequence conservation of Corona_package | |
| Identifiers | |
| Symbol | Corona_package |
| Rfam | RF00182 |
| Other data | |
RNA type | Cis-reg |
| Domain(s) | Viruses |
| SO | 0000233 |
PDB structures | PDBe |
The Coronavirus packaging signal is a conserved cis-regulatory element found in Coronavirus which has an important role in regulating the packaging of the viral genome into the capsid.
As part of the viral life cycle, within the infected cell, the viral genome becomes associated with viral proteins and assembles into new infective progeny viruses This process is called packaging and is vital for viral replication. This virus has positive-sense single-stranded RNA genome. A short region (190 base pairs) in the viral genome was identified that interacts with a viral envelope protein (protein M) and enables the viral RNA to be specificity packaged into virions.[1][2]
Other RNA families identified in the coronavirus include the SL-III cis-acting replication element (CRE), the coronavirus frameshifting stimulation element, the coronavirus 3' stem-loop II-like motif (s2m) and the coronavirus 3' UTR pseudoknot.
See also
- Bacteriophage pRNA
References
^ Qin L, Xiong B, Luo C, et al. (2003). "Identification of probable genomic packaging signal sequence from SARS-CoV genome by bioinformatics analysis". Acta Pharmacol. Sin. 24 (6): 489–96. PMID 12791173..mw-parser-output cite.citation{font-style:inherit}.mw-parser-output .citation q{quotes:"""""""'""'"}.mw-parser-output .citation .cs1-lock-free a{background:url("//upload.wikimedia.org/wikipedia/commons/thumb/6/65/Lock-green.svg/9px-Lock-green.svg.png")no-repeat;background-position:right .1em center}.mw-parser-output .citation .cs1-lock-limited a,.mw-parser-output .citation .cs1-lock-registration a{background:url("//upload.wikimedia.org/wikipedia/commons/thumb/d/d6/Lock-gray-alt-2.svg/9px-Lock-gray-alt-2.svg.png")no-repeat;background-position:right .1em center}.mw-parser-output .citation .cs1-lock-subscription a{background:url("//upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Lock-red-alt-2.svg/9px-Lock-red-alt-2.svg.png")no-repeat;background-position:right .1em center}.mw-parser-output .cs1-subscription,.mw-parser-output .cs1-registration{color:#555}.mw-parser-output .cs1-subscription span,.mw-parser-output .cs1-registration span{border-bottom:1px dotted;cursor:help}.mw-parser-output .cs1-ws-icon a{background:url("//upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Wikisource-logo.svg/12px-Wikisource-logo.svg.png")no-repeat;background-position:right .1em center}.mw-parser-output code.cs1-code{color:inherit;background:inherit;border:inherit;padding:inherit}.mw-parser-output .cs1-hidden-error{display:none;font-size:100%}.mw-parser-output .cs1-visible-error{font-size:100%}.mw-parser-output .cs1-maint{display:none;color:#33aa33;margin-left:0.3em}.mw-parser-output .cs1-subscription,.mw-parser-output .cs1-registration,.mw-parser-output .cs1-format{font-size:95%}.mw-parser-output .cs1-kern-left,.mw-parser-output .cs1-kern-wl-left{padding-left:0.2em}.mw-parser-output .cs1-kern-right,.mw-parser-output .cs1-kern-wl-right{padding-right:0.2em}
^ Narayanan K, Makino S (2001). "Cooperation of an RNA packaging signal and a viral envelope protein in coronavirus RNA packaging". J. Virol. 75 (19): 9059–67. doi:10.1128/JVI.75.19.9059-9067.2001. PMC 114474. PMID 11533169.
External links
Page for Coronavirus packaging signal at Rfam
 | This molecular or cell biology article is a stub. You can help Wikipedia by expanding it. |
